VIT_00s0173g00270

Gene locus

Information for manually-annotated gene locus

locusVIT_00s0173g00270
symbolVIT_00s0173g00270
full nameVIT_00s0173g00270
gene descriptionunknown

Other names

Synonyms for gene locus

symbol status
GSVIVG00001888001updated
Vv00s0173g00270updated

RNAseq section

Information about expression patterns derived from RNAseq experiment

experiment value(RPKM)
Callus(I)0
Leaf(I)0
Leaf(S)0
Root(I)0
Root(S)0
Stem(I)0

Array section

Information about expression patterns derived from array experiment

experiment value
leaf_04.300
leaf_06.100

Prosite section

Information about Prosite protein domains

code domain description start end
PS00001ASN_GLYCOSYLATIONN-glycosylation site4851
PS00005PKC_PHOSPHO_SITEProtein kinase C phosphorylation site2729
PS00006CK2_PHOSPHO_SITECasein kinase II phosphorylation site6568

UniProt section

All-hit from UNIPROT

hit description e-value bitscore tax_id organism
D7T5L8SubName: Full=Whole genome shotgun sequence of line PN40024, scaffold_173.assembly12x; --- Flags: Fragment;2e-3916129760Vitis vinifera
D7SYX1SubName: Full=Whole genome shotgun sequence of line PN40024, scaffold_213.assembly12x; --- Flags: Fragment;3e-3815729760Vitis vinifera
D7TR94SubName: Full=Whole genome shotgun sequence of line PN40024, scaffold_140.assembly12x; --- Flags: Fragment;7e-2210329760Vitis vinifera
D7U5N4SubName: Full=Whole genome shotgun sequence of line PN40024, scaffold_45.assembly12x; --- Flags: Fragment;2e-1375.529760Vitis vinifera
D7U6E1SubName: Full=Whole genome shotgun sequence of line PN40024, scaffold_169.assembly12x; --- Flags: Fragment;8e-1373.229760Vitis vinifera

PSORT section

Cellular localization individuated by PSORT signal peptides

location score
cytosol6.5
cytosol/endoplasmic reticulum4

TARGETP section

Cellular localization individuated by TARGETP signal peptides

location chlor_score mith_score sp_score other_score cleavage site
secretory_pathway0.0090.0770.6520.61322

Transmembrane domain section (TMHMM)

Identification of transmembrane domains with TMHMM software

n.of helices begin positions
0OUTNULL

Transmembrane domain section (HMMtop)

Identification of transmembrane domains with HMMtop software

n.of helices begin positions
0OUTNULL

orthoMCL section

Information about cluster obtained with orthoMCL sotware

cluster num.of seqs
101655